API for jotsetung/mirhostgenes
mirhostgenes: putting miRNAs into genomic context

Global functions
AlignmentIdFilter Man page Source code
AlignmentIdFilter-class Man page
ArrayFilter Man page Source code
ArrayFilter-class Man page
DatabaseFilter Man page Source code
DatabaseFilter-class Man page
EntrezFilter Man page
ExonIdFilter Man page
GeneBiotypeFilter Man page
GeneIdFilter Man page
GenenameFilter Man page
MatMirnaConfidence Man page Source code
MatMirnaConfidence-class Man page
MatMirnaFilter Man page Source code
MatMirnaFilter-class Man page
MatMirnaIdFilter Man page Source code
MatMirnaIdFilter-class Man page
MirfamFilter Man page Source code
MirfamFilter-class Man page
MirfamIdFilter Man page Source code
MirfamIdFilter-class Man page
MirhostDb Man page Source code
MirhostDb-class Man page
PositionFilter Man page Source code
PositionFilter-class Man page
PreMirnaConfidence Man page Source code
PreMirnaConfidence-class Man page
PreMirnaFilter Man page Source code
PreMirnaFilter-class Man page
PreMirnaIdFilter Man page Source code
PreMirnaIdFilter-class Man page
ProbesetIdFilter Man page Source code
ProbesetIdFilter-class Man page
ReadCountFilter Man page Source code
ReadCountFilter-class Man page
SeqEndFilter Man page Source code
SeqNameFilter Man page
SeqStartFilter Man page Source code
SeqStrandFilter Man page
TxBiotypeFilter Man page
TxIdFilter Man page
abbrevOrganismName Source code
addRequiredTables Source code
arrayfeature Source code
buildQuery Source code
buildQueryOld Source code
checkIsBasicFilter Source code
chooseAll Man page Source code
chooseClosestBetween Source code
chooseClosestForEach Man page Source code
chooseOrderedValue Man page Source code
cleanOrganismName Source code
column Man page
column,AlignmentIdFilter,MirhostDb,character-method Man page
column,AlignmentIdFilter,MirhostDb,missing-method Man page
column,AlignmentIdFilter,missing,missing-method Man page
column,AnnotationFilter,missing,missing-method Man page
column,ArrayFilter,MirhostDb,character-method Man page
column,ArrayFilter,MirhostDb,missing-method Man page
column,ArrayFilter,missing,missing-method Man page
column,DatabaseFilter,MirhostDb,character-method Man page
column,DatabaseFilter,MirhostDb,missing-method Man page
column,DatabaseFilter,missing,missing-method Man page
column,EntrezgeneFilter,MirhostDb,character-method Man page
column,EntrezgeneFilter,MirhostDb,missing-method Man page
column,EntrezgeneFilter,missing,missing-method Man page
column,ExonIdFilter,MirhostDb,character-method Man page
column,ExonIdFilter,MirhostDb,missing-method Man page
column,ExonIdFilter,missing,missing-method Man page
column,GeneBiotypeFilter,MirhostDb,character-method Man page
column,GeneBiotypeFilter,MirhostDb,missing-method Man page
column,GeneBiotypeFilter,missing,missing-method Man page
column,GeneIdFilter,MirhostDb,character-method Man page
column,GeneIdFilter,MirhostDb,missing-method Man page
column,GeneIdFilter,missing,missing-method Man page
column,GenenameFilter,MirhostDb,character-method Man page
column,GenenameFilter,MirhostDb,missing-method Man page
column,GenenameFilter,missing,missing-method Man page
column,MatMirnaConfidence,MirhostDb,character-method Man page
column,MatMirnaConfidence,MirhostDb,missing-method Man page
column,MatMirnaConfidence,missing,missing-method Man page
column,MatMirnaFilter,MirhostDb,character-method Man page
column,MatMirnaFilter,MirhostDb,missing-method Man page
column,MatMirnaFilter,missing,missing-method Man page
column,MatMirnaIdFilter,MirhostDb,character-method Man page
column,MatMirnaIdFilter,MirhostDb,missing-method Man page
column,MatMirnaIdFilter,missing,missing-method Man page
column,MirfamFilter,MirhostDb,character-method Man page
column,MirfamFilter,MirhostDb,missing-method Man page
column,MirfamFilter,missing,missing-method Man page
column,MirfamIdFilter,MirhostDb,character-method Man page
column,MirfamIdFilter,MirhostDb,missing-method Man page
column,MirfamIdFilter,missing,missing-method Man page
column,PositionFilter,MirhostDb,character-method Man page
column,PositionFilter,MirhostDb,missing-method Man page
column,PositionFilter,missing,missing-method Man page
column,PreMirnaConfidence,MirhostDb,character-method Man page
column,PreMirnaConfidence,MirhostDb,missing-method Man page
column,PreMirnaConfidence,missing,missing-method Man page
column,PreMirnaFilter,MirhostDb,character-method Man page
column,PreMirnaFilter,MirhostDb,missing-method Man page
column,PreMirnaFilter,missing,missing-method Man page
column,PreMirnaIdFilter,MirhostDb,character-method Man page
column,PreMirnaIdFilter,MirhostDb,missing-method Man page
column,PreMirnaIdFilter,missing,missing-method Man page
column,ProbesetIdFilter,MirhostDb,character-method Man page
column,ProbesetIdFilter,MirhostDb,missing-method Man page
column,ProbesetIdFilter,missing,missing-method Man page
column,ReadCountFilter,MirhostDb,character-method Man page
column,ReadCountFilter,MirhostDb,missing-method Man page
column,ReadCountFilter,missing,missing-method Man page
column,SeqEndFilter,MirhostDb,character-method Man page
column,SeqEndFilter,MirhostDb,missing-method Man page
column,SeqEndFilter,missing,missing-method Man page
column,SeqNameFilter,MirhostDb,character-method Man page
column,SeqNameFilter,MirhostDb,missing-method Man page
column,SeqNameFilter,missing,missing-method Man page
column,SeqStartFilter,MirhostDb,character-method Man page
column,SeqStartFilter,MirhostDb,missing-method Man page
column,SeqStartFilter,missing,missing-method Man page
column,SeqStrandFilter,MirhostDb,character-method Man page
column,SeqStrandFilter,MirhostDb,missing-method Man page
column,SeqStrandFilter,missing,missing-method Man page
column,TxBiotypeFilter,MirhostDb,character-method Man page
column,TxBiotypeFilter,MirhostDb,missing-method Man page
column,TxBiotypeFilter,missing,missing-method Man page
column,TxIdFilter,MirhostDb,character-method Man page
column,TxIdFilter,MirhostDb,missing-method Man page
column,TxIdFilter,missing,missing-method Man page
condition Source code
condition,AlignmentIdFilter-method Man page
condition,ArrayFilter-method Man page
condition,DatabaseFilter-method Man page
condition,MatMirnaConfidence-method Man page
condition,MatMirnaFilter-method Man page
condition,MatMirnaIdFilter-method Man page
condition,MirfamFilter-method Man page
condition,MirfamIdFilter-method Man page
condition,PositionFilter-method Man page
condition,PreMirnaConfidence-method Man page
condition,PreMirnaFilter-method Man page
condition,PreMirnaIdFilter-method Man page
condition,ProbesetIdFilter-method Man page
condition,ReadCountFilter-method Man page
condition<-,AlignmentIdFilter-method Man page
condition<-,ArrayFilter-method Man page
condition<-,DatabaseFilter-method Man page
condition<-,MatMirnaConfidence-method Man page
condition<-,MatMirnaFilter-method Man page
condition<-,MatMirnaIdFilter-method Man page
condition<-,MirfamFilter-method Man page
condition<-,MirfamIdFilter-method Man page
condition<-,PositionFilter-method Man page
condition<-,PreMirnaConfidence-method Man page
condition<-,PreMirnaFilter-method Man page
condition<-,PreMirnaIdFilter-method Man page
condition<-,ProbesetIdFilter-method Man page
condition<-,ReadCountFilter-method Man page
createMirfamTable Man page Source code
createPremirnaSequenceTable Man page Source code
dbconn Man page
dbconn,MirhostDb-method Man page
defineMirhostgenes Man page Source code
doNocase Source code
doPairData Man page Source code
doPairDataOld Source code
doSelectData Man page Source code
downloadMirbase Man page Source code
fetchAdditionalInformation Man page Source code
getArrayFeaturesForTx Man page Source code
getMetaDataValue Source code
getWhat Source code
hostgenes Man page
hostgenes,MirhostDb-method Man page
hostgenesBy Man page
hostgenesBy,MirhostDb-method Man page
hosttx Man page
hosttx,MirhostDb-method Man page
hosttxBy Man page
hosttxBy,MirhostDb-method Man page
joinQueryOnColumns Source code
joinQueryOnTables Source code
listArrays Man page
listArrays,MirhostDb-method Man page
listColumns Man page
listColumns,MirhostDb-method Man page
listDatabases Man page
listDatabases,MirhostDb-method Man page
listGenebiotypes Man page
listGenebiotypes,MirhostDb-method Man page
listTables Man page
listTables,MirhostDb-method Man page
listTxbiotypes Man page
listTxbiotypes,MirhostDb-method Man page
makeHostgeneSQLiteFromTables Man page Source code
makeMirhostgenesPackage Man page Source code
makePackageName Source code
makePackageNameFromDb Source code
matmirnas Man page
matmirnas,MirhostDb-method Man page
matmirnasBy Man page
matmirnasBy,MirhostDb-method Man page
matmirnasInMultiplePremirnas Man page
matmirnasInMultiplePremirnas,MirhostDb-method Man page
metadata,MirhostDb-method Man page
mirbaseVersion Man page
mirbaseVersion,MirhostDb-method Man page
mirfamtab Source code
organism Man page
organism,MirhostDb-method Man page
organismName Source code
parseHighConfDat Source code
parseHighConfFA Source code
parseReadCountData Source code
prefixColumns Source code
premirnas Man page
premirnas,MirhostDb-method Man page
premirnasBy Man page
premirnasBy,MirhostDb-method Man page
premirnasWithMultipleAlignments Man page
premirnasWithMultipleAlignments,MirhostDb-method Man page
probesets Man page
probesets,MirhostDb-method Man page
probesetsBy Man page
probesetsBy,MirhostDb-method Man page
removePrefix Source code
show Man page
show,MirhostDb-method Man page
tableNames Source code
transferValues Man page
transferValues,numeric,MirhostDb-method Man page
validateMirnahostgenesDb Source code
value Source code
value,AlignmentIdFilter-method Man page
value,ArrayFilter-method Man page
value,DatabaseFilter-method Man page
value,MatMirnaConfidence-method Man page
value,MatMirnaFilter-method Man page
value,MatMirnaIdFilter-method Man page
value,MirfamFilter-method Man page
value,MirfamIdFilter-method Man page
value,PositionFilter-method Man page
value,PreMirnaConfidence-method Man page
value,PreMirnaFilter-method Man page
value,PreMirnaIdFilter-method Man page
value,ProbesetIdFilter-method Man page
value,ReadCountFilter-method Man page
value<-,AlignmentIdFilter-method Man page
value<-,ArrayFilter-method Man page
value<-,DatabaseFilter-method Man page
value<-,MatMirnaConfidence-method Man page
value<-,MatMirnaFilter-method Man page
value<-,MatMirnaIdFilter-method Man page
value<-,MirfamFilter-method Man page
value<-,MirfamIdFilter-method Man page
value<-,PositionFilter-method Man page
value<-,PreMirnaConfidence-method Man page
value<-,PreMirnaFilter-method Man page
value<-,PreMirnaIdFilter-method Man page
value<-,ProbesetIdFilter-method Man page
value<-,ReadCountFilter-method Man page
version Man page
version,MirhostDb-method Man page
where Man page Source code
where,AlignmentIdFilter,MirhostDb,character-method Man page
where,AlignmentIdFilter,MirhostDb,missing-method Man page
where,AlignmentIdFilter,missing,missing-method Man page
where,AnnotationFilter,MirhostDb,character-method Man page
where,AnnotationFilter,MirhostDb,missing-method Man page
where,AnnotationFilter,missing,missing-method Man page
where,ArrayFilter,MirhostDb,character-method Man page
where,ArrayFilter,MirhostDb,missing-method Man page
where,ArrayFilter,missing,missing-method Man page
where,DatabaseFilter,MirhostDb,character-method Man page
where,DatabaseFilter,MirhostDb,missing-method Man page
where,DatabaseFilter,missing,missing-method Man page
where,EntrezgeneFilter,MirhostDb,character-method Man page
where,EntrezgeneFilter,MirhostDb,missing-method Man page
where,EntrezgeneFilter,missing,missing-method Man page
where,ExonIdFilter,MirhostDb,character-method Man page
where,ExonIdFilter,MirhostDb,missing-method Man page
where,ExonIdFilter,missing,missing-method Man page
where,GeneBiotypeFilter,MirhostDb,character-method Man page
where,GeneBiotypeFilter,MirhostDb,missing-method Man page
where,GeneBiotypeFilter,missing,missing-method Man page
where,GeneIdFilter,MirhostDb,character-method Man page
where,GeneIdFilter,MirhostDb,missing-method Man page
where,GeneIdFilter,missing,missing-method Man page
where,GenenameFilter,MirhostDb,character-method Man page
where,GenenameFilter,MirhostDb,missing-method Man page
where,GenenameFilter,missing,missing-method Man page
where,MatMirnaConfidence,MirhostDb,character-method Man page
where,MatMirnaConfidence,MirhostDb,missing-method Man page
where,MatMirnaConfidence,missing,missing-method Man page
where,MatMirnaFilter,MirhostDb,character-method Man page
where,MatMirnaFilter,MirhostDb,missing-method Man page
where,MatMirnaFilter,missing,missing-method Man page
where,MatMirnaIdFilter,MirhostDb,character-method Man page
where,MatMirnaIdFilter,MirhostDb,missing-method Man page
where,MatMirnaIdFilter,missing,missing-method Man page
where,MirfamFilter,MirhostDb,character-method Man page
where,MirfamFilter,MirhostDb,missing-method Man page
where,MirfamFilter,missing,missing-method Man page
where,MirfamIdFilter,MirhostDb,character-method Man page
where,MirfamIdFilter,MirhostDb,missing-method Man page
where,MirfamIdFilter,missing,missing-method Man page
where,PositionFilter,MirhostDb,character-method Man page
where,PositionFilter,MirhostDb,missing-method Man page
where,PositionFilter,missing,missing-method Man page
where,PreMirnaConfidence,MirhostDb,character-method Man page
where,PreMirnaConfidence,MirhostDb,missing-method Man page
where,PreMirnaConfidence,missing,missing-method Man page
where,PreMirnaFilter,MirhostDb,character-method Man page
where,PreMirnaFilter,MirhostDb,missing-method Man page
where,PreMirnaFilter,missing,missing-method Man page
where,PreMirnaIdFilter,MirhostDb,character-method Man page
where,PreMirnaIdFilter,MirhostDb,missing-method Man page
where,PreMirnaIdFilter,missing,missing-method Man page
where,ProbesetIdFilter,MirhostDb,character-method Man page
where,ProbesetIdFilter,MirhostDb,missing-method Man page
where,ProbesetIdFilter,missing,missing-method Man page
where,ReadCountFilter,MirhostDb,character-method Man page
where,ReadCountFilter,MirhostDb,missing-method Man page
where,ReadCountFilter,missing,missing-method Man page
where,SeqEndFilter,MirhostDb,character-method Man page
where,SeqEndFilter,MirhostDb,missing-method Man page
where,SeqEndFilter,missing,missing-method Man page
where,SeqNameFilter,MirhostDb,character-method Man page
where,SeqNameFilter,MirhostDb,missing-method Man page
where,SeqNameFilter,missing,missing-method Man page
where,SeqStartFilter,MirhostDb,character-method Man page
where,SeqStartFilter,MirhostDb,missing-method Man page
where,SeqStartFilter,missing,missing-method Man page
where,SeqStrandFilter,MirhostDb,character-method Man page
where,SeqStrandFilter,MirhostDb,missing-method Man page
where,SeqStrandFilter,missing,missing-method Man page
where,TxBiotypeFilter,MirhostDb,character-method Man page
where,TxBiotypeFilter,MirhostDb,missing-method Man page
where,TxBiotypeFilter,missing,missing-method Man page
where,TxIdFilter,MirhostDb,character-method Man page
where,TxIdFilter,MirhostDb,missing-method Man page
where,TxIdFilter,missing,missing-method Man page
where,list,MirhostDb,ANY-method Man page
where,list,MirhostDb,missing,missing-method Man page
jotsetung/mirhostgenes documentation built on Sept. 14, 2017, 9:52 a.m.