Files in jotsetung/mirhostgenes
mirhostgenes: putting miRNAs into genomic context
.Rbuildignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/Classes.R
R/Generics.R
R/Methods-Filter.R
R/Methods.R
R/dbhelpers.R
R/makehostgenedb.R
R/utils.R
comparison-mature-host-gene-expression.org
extdata/CEL/0929_001_Affy6hp0_h01_MB_230108.CEL.gz
extdata/CEL/0930_001_Affy6hp1_h01_MB_230108.CEL.gz
extdata/CEL/0931_001_Affy6hp3_h01_MB_230108.CEL.gz
extdata/CEL/0938_001_Affy6hm0_h01_MB130208.CEL.gz
extdata/CEL/0939_001_Affy6hm1_h01_MB130208.CEL.gz
extdata/CEL/0940_001_Affy6hm3_h01_MB_130208.CEL.gz
extdata/CEL/0941_001_C7H224m1_h01_MB_150208.CEL.gz
extdata/CEL/0942_001_C7H224p1_h01_MB_150208.CEL.gz
extdata/CEL/0943_001_C7H224m2_h01_MB_150208.CEL.gz
extdata/CEL/0944_001_C7H224p2_h01_MB_150208.CEL.gz
extdata/CEL/0945_001_C7H224m3_h01_MB_150208.CEL.gz
extdata/CEL/0946_001_C7H224p3_h01_MB_150208.CEL.gz
extdata/GEO/GSE25320/.Rhistory
extdata/GEO/GSE25320/GPL7724.txt
extdata/GEO/GSE25320/GSE25320-Affy-Chips.norm.RData
extdata/GEO/GSE25320/GSE25320-Exiqon-Slides.norm.RData
extdata/GEO/GSE25320/GSE25320-GPL570_series_matrix.txt
extdata/GEO/GSE25320/GSE25320-GPL7724_series_matrix.txt
extdata/GEO/GSE25320/GSE25320.org
extdata/GEO/GSE25320/GSE25320_RAW.tar
extdata/GEO/GSE25320/GSM622845.CEL.gz
extdata/GEO/GSE25320/GSM622845.CHP.gz
extdata/GEO/GSE25320/GSM622846.CEL.gz
extdata/GEO/GSE25320/GSM622846.CHP.gz
extdata/GEO/GSE25320/GSM622847.CEL.gz
extdata/GEO/GSE25320/GSM622847.CHP.gz
extdata/GEO/GSE25320/GSM622848.CEL.gz
extdata/GEO/GSE25320/GSM622848.CHP.gz
extdata/GEO/GSE25320/GSM622849.CEL.gz
extdata/GEO/GSE25320/GSM622849.CHP.gz
extdata/GEO/GSE25320/GSM622850.CEL.gz
extdata/GEO/GSE25320/GSM622850.CHP.gz
extdata/GEO/GSE25320/GSM622851.CEL.gz
extdata/GEO/GSE25320/GSM622851.CHP.gz
extdata/GEO/GSE25320/GSM622852.CEL.gz
extdata/GEO/GSE25320/GSM622852.CHP.gz
extdata/GEO/GSE25320/GSM623441_Cy3_US45103009_SLOT19_S01_Cropped.txt.gz
extdata/GEO/GSE25320/GSM623441_Cy5_US45103009_SLOT19_S01_Cropped.txt.gz
extdata/GEO/GSE25320/GSM623442_Cy3_US45103009_SLOT20_S01_Cropped.txt.gz
extdata/GEO/GSE25320/GSM623442_Cy5_US45103009_SLOT20_S01_Cropped.txt.gz
extdata/GEO/GSE25320/GSM623443_Cy3_US45103009_SLOT21_S01_Cropped.txt.gz
extdata/GEO/GSE25320/GSM623443_Cy5_US45103009_SLOT21_S01_Cropped.txt.gz
extdata/GEO/GSE25320/images/affy-rawdata-density.png
extdata/GEO/GSE25320/images/array-norm-maplots.png
extdata/GEO/GSE25320/images/array-rawdata-density.png
extdata/GEO/GSE25320/images/array-rawdata-maplots.png
extdata/GEO/GSE25320/images/correlation-mean-cells-probeset-mature-miRNA-via-pre-best.png
extdata/GEO/GSE25320/images/correlation-mean-cells-probeset-mature-miRNA-via-pre-high-conf-pre.png
extdata/GEO/GSE25320/images/correlation-mean-cells-probeset-mature-miRNA-via-pre-only-intronic.png
extdata/GEO/GSE25320/images/correlation-mean-cells-probeset-mature-miRNA-via-pre.png
extdata/GEO/GSE25320/images/correlation-mean-sd-mRNA-miRNA.png
extdata/GEO/GSE25320/images/preprocessing-NUSE.png
extdata/GEO/GSE25320/phenodata-affy-GSE25320.txt
extdata/GEO/GSE25320/phenodata-exiqon-GSE25320.txt
extdata/GEO/GSE47379/GSE47379-GPL15829_series_matrix.txt.gz
extdata/GEO/GSE47379/GSE47379-GPL570_series_matrix.txt.gz
extdata/GEO/GSE47379/GSE47379.org
extdata/GEO/GSE47379/GSE47379_RAW.tar
extdata/GEO/GSE47379/mirna_mature.txt.gz
extdata/GEO/GSE47379/phenodata-affy-GSE47379.txt
extdata/GEO/GSE47379/phenodata-exiqon-GSE47379.txt
extdata/GEO/GSE53384/GSE53384-GPL11532_series_matrix.txt.gz
extdata/GEO/GSE53384/GSE53384-GPL15829_series_matrix.txt.gz
extdata/GEO/GSE53384/GSE53384_RAW.tar
extdata/GEO/aliases.txt.gz
extdata/GEO/plot-utils.R
extdata/RData/Chips.mirna.RData
extdata/RData/Chips.norm.RData
extdata/RTPCR/C7H2-miRNA-result-M-mir320-norm.txt
extdata/ambion/Bioarray_1566_Sept05.txt
extdata/ambion/NormalizedData-AllFeatures-04.07.2006.txt
extdata/txt/phenoData.txt
inst/NEWS
inst/perl/define_mirna_host_genes.pl
inst/perl/get-mirbase.pl
inst/perl/get_array_features_for_host_tx.pl
inst/perl/host_tx.txt
inst/perl/probeset_test.pl
inst/pkg-template/DESCRIPTION
inst/pkg-template/NAMESPACE
inst/pkg-template/R/zzz.R
inst/pkg-template/man/package.Rd
inst/test/testDB.R
inst/test/testFunctionality.R
inst/test/testProbesets.R
inst/test/testQueries.R
inst/unitTests/test_Filters.R
inst/unitTests/test_Functionality.R
inst/unitTests/test_basic.R
inst/unitTests/test_importedFilters.R
inst/unitTests/test_matchValue.R
man/Filter-class.Rd
man/Filter-imported.Rd
man/FilterConstructors.Rd
man/MirnahostgenesDb-class.Rd
man/MirnahostgenesDb-usage.Rd
man/defineMirnahostgenes.Rd
man/matchValues.Rd
readme.org
tests/runTests.R
vignettes/biomed-central.csl
vignettes/images/dblayout.png
vignettes/mirhostgenes.bib
vignettes/mirhostgenes.org
