Files in jperezrogers/rabbit
An R Package to Create Computational Pipelines to Develop and Evaluate Biomarkers from High Dimensional Genomic Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/activateTask.R
R/addModule.R
R/addTask.R
R/calculateIndex.R
R/countTasks.R
R/createOutputDirectoryStructure.R
R/deactivateTask.R
R/deleteModule.R
R/deleteTask.R
R/generateLabelKey.R
R/generateParameterKey.R
R/getCall.R
R/indexModels.R
R/m1-class.R
R/m1-validateMethod-method.R
R/m2-class.R
R/m2-validateMethod-method.R
R/m3-class.R
R/m3-validateMethod-method.R
R/m4-class.R
R/m4-validateMethod-method.R
R/module-class.R
R/module-validateControl-method.R
R/module-validateDatatype-method.R
R/module-validateLabel-method.R
R/module-validateLibraries-method.R
R/module-validateParameters-method.R
R/newPipeline.R
R/orderModules.R
R/partitionData.R
R/pipeline-class.R
R/run.R
R/stockPipeline.R
R/summary.R
R/task-class.R
R/update.R
R/updateGenerics.R
R/updateParametersFromGenerics.R
R/wv.R
R/wv.predict.R
README.md
data/stockPipeline.rda
man/activateTask.Rd
man/addModule.Rd
man/addTask.Rd
man/deactivateTask.Rd
man/deleteModule.Rd
man/deleteTask.Rd
man/getCall.Rd
man/newPipeline.Rd
man/orderModules.Rd
man/run.Rd
man/stockPipeline.Rd
man/summary.Pipeline.Rd
man/update.Rd
man/wv.model.Rd
man/wv.predict.Rd
tests/testthat.R
tests/testthat/test-M1.R
tests/testthat/test-m1-validateMethodM1.R
tests/testthat/test-m2-validateMethodM2.R
tests/testthat/test-m3-validateMethodM3.R
tests/testthat/test-m4-validateMethodM4.R
tests/testthat/test-module-validateControl.R
tests/testthat/test-module-validateDatatype.R
tests/testthat/test-module-validateLabel.R
tests/testthat/test-module-validateLibraries.R
tests/testthat/test-module-validateParameters.R
tests/testthat/test-pipeline-addModule.R
tests/testthat/test-pipeline-deleteModule.R
tests/testthat/test-pipeline-initialize.R
tests/testthat/test-pipeline-orderModules.R
vignettes/figures/module_types.png
vignettes/vignette.Rmd
vignettes/vignette.html
