Description Usage Arguments Value
Calculates the Phylogenetic Ornstein-Uhelenbeck Process negative log likelihood, given the process hyperparameters, a phylogenetic tree, and some data.
1 | pou_logl_slow(ln_hyperparameters, phylogenetic_tree, observations)
|
ln_hyperparameters |
Vector of the natural logarithm of hyperparameters for an Ornstein-Uhlenbeck kernel in order log(phylogenetic noise, phylogenetic length-scale, non-phylogenetic noise) |
phylogenetic_tree |
Phylogenetic tree of relationships between observations |
observations |
Observations from the tips of the phylogenetic tree |
A positive value which is the negative log likelihood for the data.
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