pou_logl_slow: Phylogenetic Likelihood
In jpmeagher/sdsBAT:
Description
Usage
Arguments
Value
Description
Calculates the Phylogenetic Ornstein-Uhelenbeck Process negative log
likelihood, given the process hyperparameters, a phylogenetic tree, and some
data.
Usage
1
pou_logl_slow(ln_hyperparameters, phylogenetic_tree, observations)
Arguments
ln_hyperparameters
Vector of the natural logarithm of hyperparameters
for an Ornstein-Uhlenbeck kernel in order log(phylogenetic noise,
phylogenetic length-scale, non-phylogenetic noise)
phylogenetic_tree
Phylogenetic tree of relationships between
observations
observations
Observations from the tips of the phylogenetic tree
Value
A positive value which is the negative log likelihood for the data.
jpmeagher/sdsBAT documentation built on May 5, 2019, 3:50 a.m.
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Description Usage Arguments Value
Description
Calculates the Phylogenetic Ornstein-Uhelenbeck Process negative log likelihood, given the process hyperparameters, a phylogenetic tree, and some data.
Usage
1 | pou_logl_slow(ln_hyperparameters, phylogenetic_tree, observations)
|
Arguments
ln_hyperparameters |
Vector of the natural logarithm of hyperparameters for an Ornstein-Uhlenbeck kernel in order log(phylogenetic noise, phylogenetic length-scale, non-phylogenetic noise) |
phylogenetic_tree |
Phylogenetic tree of relationships between observations |
observations |
Observations from the tips of the phylogenetic tree |
Value
A positive value which is the negative log likelihood for the data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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