Description Usage Arguments Value Examples
Derives the Covariance matrix for points in a univariate Phylogenetic Gaussian Process given the Ornsetin-Uhelenbeck process kernel.
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ln_hyperparameters |
Vector of the natural logarithm of hyperparameters for an Ornstein-Uhlenbeck kernel in order log(phylogenetic noise, phylogenetic length-scale, non-phylogenetic noise) |
phylogenetic_tree |
Phylogenetic tree of relationships between observations |
Outputs the covariance between obsevations at the tips of the phylogenetic tree.
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