pou_simulated_data: Simulate Phylogenetic Data
In jpmeagher/sdsBAT:
Description
Usage
Arguments
Value
Description
Simulated Realisations of a Phylogenetic Ornstein-Uhlenbeck Process
Usage
1
pou_simulated_data(ln_hyperparameters, phylogenetic_tree, n_samples)
Arguments
ln_hyperparameters
Vector of the natural logarithm of hyperparameters
for an Ornstein-Uhlenbeck kernel in order log(phylogenetic noise,
phylogenetic length-scale, non-phylogenetic noise)
phylogenetic_tree
Phylogenetic tree of relationships between
observations
nsamples
The number of samples to be simulated.
Value
Outputs a matrix of size ntips x nsamples containing
nsamples simulations from a given Phylogenetic Ornstein-Uhlenbeck
Gaussian Process.
jpmeagher/sdsBAT documentation built on May 5, 2019, 3:50 a.m.
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Description Usage Arguments Value
Description
Simulated Realisations of a Phylogenetic Ornstein-Uhlenbeck Process
Usage
1 | pou_simulated_data(ln_hyperparameters, phylogenetic_tree, n_samples)
|
Arguments
ln_hyperparameters |
Vector of the natural logarithm of hyperparameters for an Ornstein-Uhlenbeck kernel in order log(phylogenetic noise, phylogenetic length-scale, non-phylogenetic noise) |
phylogenetic_tree |
Phylogenetic tree of relationships between observations |
nsamples |
The number of samples to be simulated. |
Value
Outputs a matrix of size ntips x nsamples containing nsamples simulations from a given Phylogenetic Ornstein-Uhlenbeck Gaussian Process.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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