Files in jqsunac/TCC
TCC: Differential expression analysis for tag count data with robust normalization strategies
DESCRIPTION
NAMESPACE
NEWS
R/ROKU.R
R/TCC.R
R/TCC.calcNormFactors.R
R/TCC.estimateDE.DESeq.R
R/TCC.estimateDE.DESeq2.R
R/TCC.estimateDE.R
R/TCC.estimateDE.SAMseq.R
R/TCC.estimateDE.WAD.R
R/TCC.estimateDE.YAYOI.R
R/TCC.estimateDE.baySeq.R
R/TCC.estimateDE.edgeR.R
R/TCC.estimateDE.limmavoom.R
R/TCC.generic.R
R/TCC.getNormalizedData.R
R/TCC.plotMA.R
R/TCC.public.R
R/TCC.simulation.R
R/TCC_0.4.R
R/WAD.R
R/YAYOI.R
R/clusterSample.R
data/arab.RData
data/hypoData.RData
data/hypoData_mg.RData
data/hypoData_ts.RData
data/nakai.RData
inst/CITATION
inst/unitTests/test_ROKU.R
inst/unitTests/test_WAD.R
inst/unitTests/test_calcNormFactors.R
inst/unitTests/test_clusterSample.R
inst/unitTests/test_estimateDE.R
inst/unitTests/test_getResult.R
inst/unitTests/test_new.R
inst/unitTests/test_plot.R
inst/unitTests/test_plotFCPseudocolor.R
man/ROKU.Rd
man/TCC-class.Rd
man/TCC.Rd
man/WAD.Rd
man/arab.Rd
man/calcAUCValue.Rd
man/calcNormFactors.Rd
man/clusterSample.Rd
man/estimateDE.Rd
man/filterLowCountGenes.Rd
man/getNormalizedData.Rd
man/getResult.Rd
man/hypoData.Rd
man/hypoData_mg.Rd
man/hypoData_ts.Rd
man/makeFCMatrix.Rd
man/nakai.Rd
man/plot.TCC.Rd
man/plotFCPseudocolor.Rd
man/simulateReadCounts.Rd
tests/runTests.R
vignettes/TCC.Rnw
