nakai: DNA microarray data set

In jqsunac/TCC: TCC: Differential expression analysis for tag count data with robust normalization strategies

Description

This is a log2-transformed two-group microarray (Affymetrix GeneChip) data consisting of 31,099 probesets. A total of eight samples were taken from the rat liver: the first four samples are fed and the last fours are 24-hour fasted. The original data can be obtained from NCBI Gene Expression Omnibus (GEO) with GSE7623. This is a subset.

Usage

data(nakai)

Format

nakai is a matrix of 31,099 rows (probesets) and 8 columns (samples or tissues).

References

Nakai Y, Hashida H., Kadota K, Minami M, Shimizu K, Matsumoto I, Kato H, Abe K., Up-regulation of genes related to the ubiquitin-proteasome system in the brown adipose tissue of 24-h-fasted rats. Bioscience Biotechnology and Biochemistry 2008, 72(1):139-148.

Examples

data(nakai)

jqsunac/TCC documentation built on March 20, 2021, 4:23 a.m.