Files in jrboyd/seqqc
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/QcConfig.R
R/functions_make.R
R/functions_misc.R
R/functions_plot.R
R/functions_scc.R
R/functions_write.R
inst/extdata/CTCF_in_10a_overlaps.bed
inst/extdata/MCF10AT1_CTCF_FE_random100.bw
inst/extdata/MCF10AT1_CTCF_R1.100peaks.bam
inst/extdata/MCF10AT1_CTCF_R1.100peaks.bam.bai
inst/extdata/MCF10AT1_CTCF_random100.narrowPeak
inst/extdata/MCF10A_CTCF_FE_random100.bw
inst/extdata/MCF10A_CTCF_R1.100peaks.bam
inst/extdata/MCF10A_CTCF_R1.100peaks.bam.bai
inst/extdata/MCF10A_CTCF_random100.narrowPeak
inst/extdata/MCF10CA1_CTCF_FE_random100.bw
inst/extdata/MCF10CA1_CTCF_R1.100peaks.bam
inst/extdata/MCF10CA1_CTCF_R1.100peaks.bam.bai
inst/extdata/MCF10CA1_CTCF_random100.narrowPeak
inst/extdata/gencode.v35.annotation.IKZF1.gtf
inst/extdata/gencode.v35.annotation.at_peaks.gtf
inst/extdata/test_fastq.4_reads.fq
inst/extdata/test_fastq.4_reads.fq.cnt
inst/extdata/test_fastq.4_reads.fq.gz
inst/extdata/test_fastq.4_reads.fq.gz.cnt
inst/extdata/test_fastq.5_reads.fastq
inst/extdata/test_fastq.5_reads.fastq.cnt
inst/extdata/test_fastq.5_reads.fastq.gz
inst/extdata/test_fastq.5_reads.fastq.gz.cnt
inst/extdata/test_peaks.bam
inst/extdata/test_peaks.bam.bai
inst/extdata/test_peaks.bed
man/QcColorMapping-methods.Rd
man/QcConfig-class.Rd
man/QcConfig.Rd
man/QcConfigFeatures-class.Rd
man/QcConfigFeatures.Rd
man/QcConfigSignal-class.Rd
man/QcConfigSignal.Rd
man/QcScaleColor-methods.Rd
man/QcScaleFill-methods.Rd
man/harmonize_seqlengths.Rd
man/make_anno_dt.Rd
man/make_anno_grs.Rd
man/make_assign_dt.Rd
man/make_centered_query_gr.Rd
man/make_dt.Rd
man/make_feature_as_signal_dt.Rd
man/make_feature_overlap_signal_profiles.Rd
man/make_fq_dt.Rd
man/make_frip_dt.Rd
man/make_peak_dt.Rd
man/make_scc_dt.Rd
man/make_scc_dt.single.Rd
man/plot_anno_overlap.Rd
man/plot_feature_comparison.Rd
man/plot_feature_overlap_signal_profiles.Rd
man/plot_fq_dt.Rd
man/plot_frip_dt.Rd
man/plot_scc_dt.Rd
man/plot_signals.Rd
man/write_bed_frip.Rd
man/write_bed_overlaps.Rd
seqqc.Rproj
tests/testthat.R
tests/testthat/test_annotation.R
vignettes/MM_CTCF_qc.Rmd
