Description Usage Arguments Details Value Examples
View source: R/functions_make.R
Loads a GTF file and processes it to list of GRanges suitable for serial
annotation by make_feature_as_signal_dt
.
1 | make_anno_grs(gtf_file)
|
gtf_file |
A gtf or gtf.gz file from GENCODE Other sources may work but have not been tested. |
Output is intended for use with make_feature_as_signal_dt
a named list of GRanges where each corresponds to an annotated feature type
1 2 | gtf_file = system.file(package = "seqqc", "extdata/gencode.v35.annotation.at_peaks.gtf")
make_anno_grs(gtf_file)
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