Man pages for jreisner/sparseBiclustering
Biclustering with Missing Data
| as.Biclust | Convert a 'biclustermd' object to a 'Biclust' object |
| autoplot.biclustermd | Make a heatmap of sparse biclustering results |
| autoplot.biclustermd_sim | Plot similarity measures between two consecutive... |
| autoplot.biclustermd_sse | Plot sums of squared errors (SSEs) consecutive biclustering... |
| biclustermd | Bicluster data with non-random missing values |
| biclustermd-package | biclustermd: A package to bicluster data with missing values |
| binary_vector_gen | Make a binary vector with all values equal to zero except for... |
| cell_heatmap | Make a heat map of bicluster cell sizes. |
| cell_mse | Make a data frame containing the MSE for each bicluster cell |
| cluster_iteration_sum_sse | Calculate the sum cluster SSE in each iteration |
| col_cluster_names | Get column names in each column cluster |
| col.names | A generic to gather column names |
| col.names.biclustermd | Get data matrix column names and their corresponding column... |
| compare_biclusters | Compare two biclusterings or a pair of partition matrices |
| fill_empties_P | Randomly select a column prototype to fill an empty column... |
| fill_empties_Q | Randomly select a row prototype to fill an empty row... |
| format_partition | Format a partition matrix |
| gather.biclustermd | Gather a biclustermd object |
| jaccard_similarity | Compute the Jaccard similarity coefficient for two... |
| mse_heatmap | Make a heatmap of cell MSEs |
| partition_gen | Generate an intial, random partition matrix with N objects... |
| partition_gen_by_p | Create a partition matrix with a partition vector p |
| part_matrix_to_vector | Convert a partition matrix to a vector |
| position_finder | Find the index of the first nonzero value in a vector |
| print.biclustermd | Print an object of class biclustermd |
| reorder_biclust | Reorder a bicluster object for making a heat map |
| rep_biclustermd | Repeat a biclustering to achieve a minimum SSE solution |
| results_heatmap | Make a heatmap of sparse biclustering results |
| row_cluster_names | Get row names in each row cluster |
| row.names.biclustermd | Get data matrix row names and their corresponding row cluster... |
| runtimes | Algorithm run time data |
| synthetic | Synthetic data for examples. |
| tune_biclustermd | Bicluster data over a grid of tuning parameters |
