as.Biclust: Convert a 'biclustermd' object to a 'Biclust' object

In jreisner/sparseBiclustering: Biclustering with Missing Data

Description

Convert a biclustermd object to a Biclust object

Usage

as.Biclust(object)

Arguments

object

The biclustermd object to convert to a Biclust object

Value

Returns an object of class Biclust.

Examples

data("synthetic")

bc <- biclustermd(synthetic, col_clusters = 3, row_clusters = 2,
                miss_val = mean(synthetic, na.rm = TRUE),
                miss_val_sd = sd(synthetic, na.rm = TRUE),
                col_min_num = 2, row_min_num = 2,
                col_num_to_move = 1, row_num_to_move = 1,
                max.iter = 10)
bc

as.Biclust(bc)

# biclust::drawHeatmap won't work since it doesn't exclude NAs
## Not run: biclust::drawHeatmap(synthetic, as.Biclust(bc), 6)

# bicluster 6 is in the top right-hand corner here:
autoplot(bc)
# compare with bicust::drawHeatmap2:
biclust::drawHeatmap2(synthetic, as.Biclust(bc), 6)

# bicluster 3 is in the bottom right-hand corner here:
autoplot(bc)
# compare with bicust::drawHeatmap2:
biclust::drawHeatmap2(synthetic, as.Biclust(bc), 3)

jreisner/sparseBiclustering documentation built on June 22, 2021, 12:54 p.m.