cqimport: Import BioRad qPCR Data

In jrijn/Rsome: Analyse RT-qPCR Data

Description

This function imports a .txt file from CFX manager and returns a dataframe.

Usage

cqimport(indir, tablename, dropunnecessary = TRUE)

Arguments

tablename:	This is the filename of the .txt file containing Cq values as copied from the file manager.
indir:	The path of the root directory containing the script.
dropunnecessary:	Defaults to TURE. If TRUE, returns only the columns "Well", "Target", "Sample", "Cq".

Details

First simply use the file name (without .txt) as input, assuming subfolder /input as source. The Cq is set to 40 in those wells were the threshold was not reached.

Examples

#The .txt files should be in: "parent_directory/input/example_file_name.txt"

setwd("parent_directory")
filename <- "example_file_name"
df <- cqimport(filename)

jrijn/Rsome documentation built on April 13, 2020, 7:52 p.m.