Pi_S.par: Calculate Pi_S based on intergenic loci. This is obtained by...
In jsalojar/PiNSiR: What the Package Does (One Line, Title Case)
Pi_S.par R Documentation
Calculate Pi_S based on intergenic loci.
This is obtained by excluding all exonic loci.
Description
Calculate Pi_S based on intergenic loci.
This is obtained by excluding all exonic loci.
Usage
Pi_S.par(TH, exon.all, nSNP = NA, cores = 15)
Arguments
TH
Site-wise theta calculated using ANGSD
exon.all
Coordinates of all gene models
nSNP
If given, divides the total Pi with the given number of SNPs.
cores
Number of cores for parallel computation
Value
a list with Pi from intergenic regions, chromosome-wise cumulative sums and numbers of SNPs.
jsalojar/PiNSiR documentation built on Nov. 1, 2023, 1:47 p.m.
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| Pi_S.par | R Documentation |
Calculate Pi_S based on intergenic loci. This is obtained by excluding all exonic loci.
Description
Calculate Pi_S based on intergenic loci. This is obtained by excluding all exonic loci.
Usage
Pi_S.par(TH, exon.all, nSNP = NA, cores = 15)
Arguments
TH |
Site-wise theta calculated using ANGSD |
exon.all |
Coordinates of all gene models |
nSNP |
If given, divides the total Pi with the given number of SNPs. |
cores |
Number of cores for parallel computation |
Value
a list with Pi from intergenic regions, chromosome-wise cumulative sums and numbers of SNPs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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