API for jsicherman/GemmAPI
A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

Global functions
.body Source code
.getResultSets Man page Source code
accessField Man page
addToFilter Source code
blank_processor Man page
checkBounds Man page
compress_arg Source code
encode Man page
filter_properties Man page
forget_gemma_memoised Man page Source code
gemma.R Man page
gemma.R-package Man page
gemmaCache Man page Source code
gemmaPath Man page Source code
gemma_call Man page
gemma_kable Man page Source code
gemma_memoise Man page Source code
get_all_pages Man page
get_child_terms Man page
get_dataset_annotations Man page Source code
get_dataset_design Man page Source code
get_dataset_differential_expression_analyses Man page Source code
get_dataset_expression Man page Source code
get_dataset_expression_for_genes Man page Source code
get_dataset_object Man page
get_dataset_platforms Man page Source code
get_dataset_processed_expression Man page Source code
get_dataset_quantitation_types Man page Source code
get_dataset_raw_expression Man page Source code
get_dataset_samples Man page Source code
get_datasets Man page Source code
get_datasets_by_ids Man page Source code
get_differential_expression_values Man page
get_gene_differential_expression_values Man page Source code
get_gene_go_terms Man page Source code
get_gene_locations Man page Source code
get_gene_probes Man page Source code
get_genes Man page Source code
get_platform_annotations Man page Source code
get_platform_datasets Man page Source code
get_platform_element_genes Man page Source code
get_platforms_by_ids Man page Source code
get_result_sets Man page Source code
get_taxa Man page
get_taxa_by_ids Man page Source code
get_taxon_datasets Man page Source code
in_memory_cache Source code
isEmpty Man page
make_design Man page
mem.getResultSets Source code
memget_dataset_annotations Source code
memget_dataset_design Source code
memget_dataset_differential_expression_analyses Source code
memget_dataset_expression_for_genes Source code
memget_dataset_platforms Source code
memget_dataset_processed_expression Source code
memget_dataset_quantitation_types Source code
memget_dataset_raw_expression Source code
memget_dataset_samples Source code
memget_datasets Source code
memget_datasets_by_ids Source code
memget_gene_differential_expression_values Source code
memget_gene_go_terms Source code
memget_gene_locations Source code
memget_gene_probes Source code
memget_genes Source code
memget_platform_datasets Source code
memget_platform_element_genes Source code
memget_platforms_by_ids Source code
memget_result_sets Source code
memget_taxa_by_ids Source code
memoise Man page
memsearch_annotations Source code
memsearch_gemma Source code
nullCheck Man page
processAnnotations Man page
processCharacteristicValueObject Man page
processDEA Man page Source code
processDEMatrix Man page
processDEcontrasts Man page
processDatasetResultSets Man page
processDatasets Man page Source code
processDate Source code
processDesignMatrix Man page
processDifferentialExpressionAnalysisResultByGeneValueObject_tsv Man page
processDifferentialExpressionAnalysisResultSetValueObject Man page
processElements Man page
processExpressionMatrix Man page
processFile Man page
processGO Man page
processGemmaArray Man page Source code
processGeneLocation Man page
processGenes Man page
processPlatforms Man page
processQuantitationTypeValueObject Man page
processResultSetFactors Man page
processSamples Man page
processSearchAnnotations Man page Source code
processTaxon Man page
process_search Man page
read_gzipped_tsv Source code
search_annotations Man page Source code
search_datasets Man page Source code
search_gemma Man page Source code
setGemmaPath Man page Source code
set_gemma_user Man page Source code
subset_factorValues Man page
update_result Man page
validateBoolean Man page Source code
validateConsolidate Source code
validateFilter Source code
validateID Man page Source code
validateLimit Man page Source code
validateNumber Source code
validateOptionalID Man page Source code
validateOptionalQuery Man page Source code
validateOptionalTaxon Man page Source code
validatePositiveInteger Man page Source code
validateQuery Man page Source code
validateResultType Man page Source code
validateSingleID Man page Source code
validateSingleQuery Source code
validateSort Man page Source code
validateTaxa Man page Source code
validateTaxon Man page Source code
jsicherman/GemmAPI documentation built on Oct. 25, 2024, 5:17 p.m.