chlcoef: Calculation of extracted versus fluoresced chlorophyll...

In jsta/DataflowR: Toolbox for Processing and Viewing Underway Dataflow Output

Calculation of extracted versus fluoresced chlorophyll coefficients

Description

Calculate extracted versus fluoresced chlorophyll coefficients

Usage

chlcoef(yearmon, varlist = NA, remove.flags = TRUE, overwrite = FALSE,
  fdir = getOption("fdir"), polypcut = 0.6, corcut = 0.7,
  streamcov = 0.5, checkvif = TRUE, logtransform = FALSE)

Arguments

yearmon	numeric date of survey
varlist	character vector of variable names to use in model
remove.flags	logical trim dataset based on flags?
overwrite	logical overwrite previous coefficients?
fdir	file.path to data folder
polypcut	numeric used to switch to a polynomial regression fit
corcut	numeric used to screen bad variables with bad correlation coefficients
streamcov	numeric percentage of non-missing streaming data used to exclude variables under consideration
checkvif	logical check final equation for multicollinearity using VIF?
logtransform	logical

Details

this function should be interactive

Examples

## Not run: 
chlcoef(201308)
chlcoef(201606, varlist = c("chl.ug.l", "turb.ntu", "phycoc", 
"c6cdom", "c6chl", "phycoe"), corcut = 0.75)

## End(Not run)

jsta/DataflowR documentation built on Sept. 27, 2022, 11:13 p.m.