momspi16S: Construct MOMS-PI 16S rRNA phyloseq object

In jstansfield0/HMP2Data: 16s rRNA sequencing data from the Human Microbiome Project 2

Description

The Multi-Omic Microbiome Study-Pregnancy Initiative (MOMS-PI) was funded by the NIH Roadmap HUman Microbiome Project to understand the impact of the vaginal microbiome on pregnancy and the fetal microbiome. This longitudinal study contains samples from various body sites of 596 women. This phyloseq object contains the 16S rRNA sequencing data that was collected. Also contained are the taxa data and participant metadata.

Usage

momspi16S()

Format

A phyloseq object with 7,665 taxa and 9,107 samples.

OTU Table

A counts matrix for the rRNA-seq results.

Sample Data

file_id

File identifier

md5

md5 hash for the file

size

file size

urls

URL for the file

sample_id

Sample identifier

file_name

Filename which the sample was taken from

subject_id

Participant identifier

sample_body_site

Body site of the sample

visit_number

Visit number

subject_gender

Participant gender

subject_race

Participant race

study_full_name

Name of the study

project_name

Name of project

Taxonomy Table

Taxonomy table for the taxa identified.

Value

a phyloseq object

Examples

momspi <- momspi16S()

jstansfield0/HMP2Data documentation built on Sept. 8, 2020, 2:16 a.m.