momspiMultiAssay: Make MOMS-PI MultiAssayExperiment

In jstansfield0/HMP2Data: 16s rRNA sequencing data from the Human Microbiome Project 2

Description

Construct MultiAssayExperiment for MOMS-PI 16S rRNA and cytokines data.

Usage

momspiMultiAssay()

Format

A MultiAssayExperiment object with a 16S rRNA matrix and Cytokine matrix

16S

A counts matrix for the 16S rRNA-seq results.

cytokines

A counts matrix for the cytokines results.

colData

file_id

File identifier

md5

md5 hash for the file

size

file size

urls

URL for the file

sample_id

Sample identifier

file_name

Filename which the sample was taken from

subject_id

Participant identifier

sample_body_site

Body site of the sample

visit_number

Visit number

subject_gender

Participant gender

subject_race

Participant race

study_full_name

Name of the study

project_name

Name of project

Value

A multiAssay Experiment object

Examples

momspiMA <- momspiMultiAssay()

jstansfield0/HMP2Data documentation built on Sept. 8, 2020, 2:16 a.m.