Files in jstansfield0/HiCcompare2
Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/HCT116_r1.R
R/HCT116_r2.R
R/HCT116_r3.R
R/HCT116_r4.R
R/HCT116_r5.R
R/HCT116_r6.R
R/classes.R
R/cyclic_loess.R
R/exportJuicebox.R
R/fastlo.R
R/filtering.R
R/glm.R
R/hg19_cyto.R
R/hg38_cyto.R
R/hicexp2.R
R/hicexp_diff.R
R/library_scaling.R
R/make_hicexp.R
R/manhattan.R
R/perm_test.R
R/plot_functions.R
R/smartApply.R
R/topDirs.R
README.md
data/HCT116_r1.rda
data/HCT116_r2.rda
data/HCT116_r3.rda
data/HCT116_r4.rda
data/HCT116_r5.rda
data/HCT116_r6.rda
data/hg19_cyto.rda
data/hg38_cyto.rda
data/hicexp2.rda
data/hicexp_diff.rda
inst/CITATION
man/HCT116_r1.Rd
man/HCT116_r2.Rd
man/HCT116_r3.Rd
man/HCT116_r4.Rd
man/HCT116_r5.Rd
man/HCT116_r6.Rd
man/Hicexp-class.Rd
man/MD_composite.Rd
man/MD_hicexp.Rd
man/cyclic_loess.Rd
man/exportJuicebox.Rd
man/fastlo.Rd
man/hg19_cyto.Rd
man/hg38_cyto.Rd
man/hic_exactTest.Rd
man/hic_filter.Rd
man/hic_glm.Rd
man/hic_scale.Rd
man/hic_table.Rd
man/hicexp2.Rd
man/hicexp_diff.Rd
man/make_hicexp.Rd
man/manhattan_hicexp.Rd
man/meta.Rd
man/normalized.Rd
man/perm_test.Rd
man/plot_counts.Rd
man/plot_pvals.Rd
man/pval_heatmap.Rd
man/resolution.Rd
man/results.Rd
man/show.Rd
man/smartApply.Rd
man/topDirs.Rd
tests/testthat.R
tests/testthat/test_comparison.R
tests/testthat/test_make_hicexp.R
tests/testthat/test_normalization.R
vignettes/juiceboxVisualization.Rmd
vignettes/multiHiCcompare.Rmd
vignettes/multiHiCcompare_glm.png
