plot_counts: Plot the count results from topDirs
In jstansfield0/HiCcompare2: Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available
Description
Usage
Arguments
Value
Examples
Description
Plot the count results from topDirs
Usage
1
plot_counts(dirs, plot.chr = NA)
Arguments
dirs
The output of the topDirs function when the return_df
option is set to "bed".
plot.chr
A numeric value indicating a specific
chromosome number to subset the plot to. Defaults
to NA indicating that all chromosomes will be plotted.
Value
A plot.
Examples
1
2
3
data('hicexp_diff')
dirs <- topDirs(hicexp_diff, return_df = 'bed')
plot_counts(dirs)
jstansfield0/HiCcompare2 documentation built on May 4, 2021, 8:36 a.m.
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Description Usage Arguments Value Examples
Description
Plot the count results from topDirs
Usage
1 | plot_counts(dirs, plot.chr = NA)
|
Arguments
dirs |
The output of the topDirs function when the return_df option is set to "bed". |
plot.chr |
A numeric value indicating a specific chromosome number to subset the plot to. Defaults to NA indicating that all chromosomes will be plotted. |
Value
A plot.
Examples
1 2 3 | data('hicexp_diff')
dirs <- topDirs(hicexp_diff, return_df = 'bed')
plot_counts(dirs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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