ScoreVisualizer: ScoreVisualizer.R

In judyheewonlee/ScoreVisualizer: Score Visualizer

Description

The ScoreVisualizer function is the main function for the ScoreVisualizer package. It calls the helper functions and generates a visual output to show the degree of scoring within two alignments.

Details.

Usage

ScoreVisualizer(reference, compare, SP = TRUE, CS = TRUE,
  fileName = NULL)

Arguments

reference	A directory path to the reference alignment the user would like to use
compare	A directory path to the alignment being compared to the reference alignment
SP	A boolean value left TRUE if the user would like to generate the sum of pairs in their output
CS	A boolean value left TRUE if the user would like to generate the total column score in their output
fileName	The preferred name of the output file

Examples

reference <- "data/BB11017ClustalW.fasta"
test <- "data/BB11017Muscle.fasta"
ScoreVisualizer(reference, test)

judyheewonlee/ScoreVisualizer documentation built on May 31, 2019, 5:20 p.m.