Description Usage Arguments Value Examples
The getScore
function generates a "Pairwise alignment
comparison" (PAC) object which contains the sum of pairs
score and the total column score of two multiple sequence
alignments.
Details.
1 |
reference |
A directory path to the reference alignment the user would like to use |
compare |
A directory path to the alignment being compared to the reference alignment |
SP |
A boolean value left TRUE if the user would like to generate the sum of pairs in their output |
CS |
A boolean value left TRUE if the user would like to generate the total column score in their output |
The Pairwise alignment comparison object from the two alignments provided
1 2 | score <- getScore("data/sampleref.fasta", "data/sampleMuscle.fasta")
score
|
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