getScore: getScore

In judyheewonlee/ScoreVisualizer: Score Visualizer

Description

The getScore function generates a "Pairwise alignment comparison" (PAC) object which contains the sum of pairs score and the total column score of two multiple sequence alignments.

Details.

Usage

getScore(reference, compare, SP = TRUE, CS = TRUE)

Arguments

reference	A directory path to the reference alignment the user would like to use
compare	A directory path to the alignment being compared to the reference alignment
SP	A boolean value left TRUE if the user would like to generate the sum of pairs in their output
CS	A boolean value left TRUE if the user would like to generate the total column score in their output

Value

The Pairwise alignment comparison object from the two alignments provided

Examples

score <- getScore("data/sampleref.fasta", "data/sampleMuscle.fasta")
score

judyheewonlee/ScoreVisualizer documentation built on May 31, 2019, 5:20 p.m.