makeScoreFile: makeScoreFile
In judyheewonlee/ScoreVisualizer: Score Visualizer

Description Usage Arguments Value Examples

The makeScoreFile function generates score files containing columnwise sum of pairs score and total column score. These files are utilized by LaTeX to generate the graphs representing the scores in the alignments.

Details.

1 2	makeScoreFile(reference, compare, SP = TRUE, CS = TRUE, filename, score)

`reference`	A directory path to the reference alignment the user would like to use
`compare`	A directory path to the alignment being compared to the reference alignment
`SP`	A boolean value left TRUE if the user would like to generate the sum of pairs in their output
`CS`	A boolean value left TRUE if the user would like to generate the total column score in their output
`file`	The preferred name of the output file

A vector containing the paths to the score files

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score <- getScore("data/sampleref.fasta", "data/sampleMuscle.fasta")
makeScoreFile("data/sampleref.fasta", "data/sampleMuscle.fasta", 
                  fileName = "Test1")