Files in julaiti/MSPC
Multiple Sample Peak Calling: Using combined evidence from replicates to evaluate ChIP-seq peaks
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
MSPC.Rproj
NAMESPACE
NEWS.md
R/FDR_stats.R
R/MSPC_package.R
R/denoise_ERs.R
R/export_ERs.R
R/getPlot.R
R/readPeakFiles.R
R/runMSPC.R
R/utilities.R
R/zzz.R
README.md
inst/extdata/wgEncodeOpenChromDnaseK562G1phaseAlnRep1.bed
inst/extdata/wgEncodeOpenChromDnaseK562G1phaseAlnRep2.bed
inst/extdata/wgEncodeOpenChromDnaseK562G1phaseAlnRep3.bed
inst/extdata/wgEncodeOpenChromDnaseK562NabutAlnRep1.bed
inst/extdata/wgEncodeOpenChromDnaseK562NabutAlnRep2.bed
inst/extdata/wgEncodeSydhHistoneK562bH3k4me3bUcdAlnRep1.bed
inst/extdata/wgEncodeSydhHistoneK562bH3k4me3bUcdAlnRep2.bed
inst/extdata/wgEncodeSydhTfbsK562CmycStdAlnRep1.bed
inst/extdata/wgEncodeSydhTfbsK562CmycStdAlnRep2.bed
inst/extdata/wgEncodeSydhTfbsK562JundIggrabAlnRep1.bed
inst/extdata/wgEncodeSydhTfbsK562JundIggrabAlnRep2.bed
man/FDR_stats.Rd
man/MSPC-package.Rd
man/denoise_ERs.Rd
man/export_ERs.Rd
man/getPeakFile.Rd
man/getPlot.Rd
man/info.Rd
man/readPeakFiles.Rd
man/runMSPC.Rd
output/accuracy_plot.png
output/benchmark_plot.png
output/package_pipeline.jpg
tests/testthat.R
tests/testthat/test_all.R
vignettes/MSPC_User_Guide.Rmd
vignettes/bibliography.bib
vignettes/nature.csl
