API for julian-gehring/Rariant
Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies
| Global functions | |
|---|---|
| Rariant | Man page |
| Rariant-package | Man page |
| acCi | Man page |
| baseFillScale | Man page |
| callConsensus | Man page |
| ciAdjustLevel | Man page |
| ciCovers | Man page |
| ciOutside | Man page |
| ciOverlap | Man page |
| ciWidth | Man page |
| coverageProbability | Man page |
| eventFillScale | Man page |
| evidenceHeatmap | Man page |
| feTest | Man page |
| filterCalls | Man page |
| findCalls | Man page |
| gr2pos | Man page |
| mergeCalls | Man page |
| mismatchCount | Man page |
| mismatchUtils | Man page |
| nhsCi | Man page |
| nmTest | Man page |
| plotAbundanceShift | Man page |
| plotCIs | Man page |
| plotConfidenceIntervals | Man page |
| pos2gr | Man page |
| propCIs | Man page |
| propTests | Man page |
| rariant | Man page |
| rariant,BamFile,BamFile,GRanges-method | Man page |
| rariant,array,array,GRanges-method | Man page |
| rariant,character,character,GRanges-method | Man page |
| rariant-methods | Man page |
| rariantInspect | Man page |
| rariantStandalone | Man page |
| rateFillScale | Man page |
| readRariant | Man page |
| scoreTest | Man page |
| selectStrand | Man page |
| seqDepth | Man page |
| splitSample | Man page |
| splitSampleBinom | Man page |
| tallyBamRegion | Man page |
| tallyPlot | Man page |
| updateCalls | Man page |
| verdictColorScale | Man page |
| writeRariant | Man page |
| yesNoMaybe | Man page |
