stderPlot: Standard error plot

In jvanheld/stats4bioinfo: Utilities for the book "Statistics for bioinformatics"

Description

Complement to the volcano plots generated by stats4bioinfo::tTestPerRow.plotVolcano() Draw a plot that enables to compare - standard error and significance - mean difference, standard error and significance

Usage

stderPlot(multi.t, col.points = "#888888", col.grid = "#CCCCCC",
  col.lines = "blue", col.positive = "#00BB00", ...)

Arguments

multi.t	Must be the data frame obtained with tTestPerRow()
...	Additional parameters are passed to the plot function
col.points='#888888'	Color(s) for the points
col.lines='blue'	Color for the line highlighting the significance threshold
col.grid=#CCCCCC	Grid color
col.positive='#00BB00'	Color to highlight significant points (called positive)

Author(s)

Jacques van Helden ([e-mail])

Examples

## The object welch.table should have been generated with \code{\link{tTestPerRow}} (see examples in the doc)
stderPlot(welch.table)

jvanheld/stats4bioinfo documentation built on May 20, 2019, 5:16 a.m.