API for jyyulab/NetBID
Network-based Bayesian Inference of Drivers, version 2
| Global functions | |
|---|---|
| FC | Source code |
| IQR.filter | Man page Source code |
| NetBID.analysis.dir.create | Man page Source code |
| NetBID.lazyMode.DriverEstimation | Man page Source code |
| NetBID.lazyMode.DriverVisualization | Man page Source code |
| NetBID.loadRData | Man page Source code |
| NetBID.network.dir.create | Man page Source code |
| NetBID.saveRData | Man page Source code |
| RNASeqCount.normalize.scale | Man page Source code |
| SJAracne.prepare | Man page Source code |
| bid | Man page Source code |
| boxtext | Source code |
| cal.Activity | Man page Source code |
| cal.Activity.GS | Man page Source code |
| cal.Activity.old | Source code |
| check_option | Source code |
| check_para | Source code |
| check_scalefree | Source code |
| clean_charVector | Source code |
| combineDE | Man page Source code |
| combinePvalVector | Man page Source code |
| db.preload | Man page Source code |
| do.std | Source code |
| draw.2D | Man page Source code |
| draw.2D.ellipse | Man page Source code |
| draw.2D.interactive | Man page Source code |
| draw.2D.text | Man page Source code |
| draw.3D | Man page Source code |
| draw.GSEA | Man page Source code |
| draw.GSEA.NetBID | Man page Source code |
| draw.GSEA.NetBID.GS | Man page Source code |
| draw.MICA | Man page Source code |
| draw.NetBID | Man page Source code |
| draw.bubblePlot | Man page Source code |
| draw.categoryValue | Man page Source code |
| draw.clustComp | Man page Source code |
| draw.colorbar | Source code |
| draw.combineDE | Man page Source code |
| draw.correlation | Source code |
| draw.emb.kmeans | Man page Source code |
| draw.eset.QC | Man page Source code |
| draw.funcEnrich.bar | Man page Source code |
| draw.funcEnrich.cluster | Man page Source code |
| draw.heatmap | Man page Source code |
| draw.heatmap.local | Source code |
| draw.meanSdPlot | Source code |
| draw.network.QC | Man page Source code |
| draw.oncoprint | Man page Source code |
| draw.targetNet | Man page Source code |
| draw.targetNet.TWO | Man page Source code |
| draw.volcanoPlot | Man page Source code |
| es | Source code |
| funcEnrich.Fisher | Man page Source code |
| funcEnrich.GSEA | Man page Source code |
| generate.eset | Man page Source code |
| generate.masterTable | Man page Source code |
| get.SJAracne.network | Man page Source code |
| get.TF_SIG.list | Man page Source code |
| get.class.color | Man page Source code |
| getDE.BID.2G | Man page Source code |
| getDE.limma.2G | Man page Source code |
| get_ES | Source code |
| get_IDtransfer | Man page Source code |
| get_IDtransfer2symbol2type | Man page Source code |
| get_IDtransfer_betweenSpecies | Man page Source code |
| get_class2design | Source code |
| get_clustComp | Man page Source code |
| get_clustComp_MICA | Source code |
| get_consensus_cluster | Source code |
| get_gr2driver | Source code |
| get_igraph2matrix | Source code |
| get_int_group | Man page Source code |
| get_jac | Source code |
| get_label_manual | Source code |
| get_name_transfertab | Man page Source code |
| get_net2target_list | Man page Source code |
| get_obs_label | Man page Source code |
| get_target_list2matrix | Source code |
| get_transparent | Source code |
| get_z2p | Source code |
| get_z2p_each | Source code |
| gs.preload | Man page Source code |
| list2mat | Source code |
| load.exp.GEO | Man page Source code |
| load.exp.RNASeq.demo | Man page Source code |
| load.exp.RNASeq.demoSalmon | Man page Source code |
| merge_TF_SIG.AC | Man page Source code |
| merge_TF_SIG.network | Man page Source code |
| merge_eset | Man page Source code |
| merge_gs | Man page Source code |
| merge_target_list | Man page Source code |
| out2excel | Man page Source code |
| par.char2inch | Source code |
| par.char2pos | Source code |
| par.devSize2xypos | Source code |
| par.inch2pos | Source code |
| par.lineHeight2inch | Source code |
| par.pos2inch | Source code |
| processDriverProfile | Man page Source code |
| strheightMod | Source code |
| strwidthMod | Source code |
| test.targetNet.overlap | Man page Source code |
| update_SJAracne.network | Man page Source code |
| update_eset.feature | Man page Source code |
| update_eset.phenotype | Man page Source code |
| vec2list | Source code |
| z2col | Man page Source code |
