.Rbuildignore
.dockerignore
.github/workflows/cgc.yml
.github/workflows/publish.yml
.gitignore
COPYRIGHT.txt
DESCRIPTION
Dockerfile
Dockerfile.cgc
IBC_CCDI/cloudAppNetBID.R
LICENSE
NAMESPACE
NetBID2.Rproj
NetBID_manual.pdf
R/pipeline_functions.R
README.md
build_docker_image.sh
cgc/netbid.cwl
demo_scripts/.Rapp.history
demo_scripts/analysis_and_plot_demo1.R
demo_scripts/pipeline_analysis_demo1.R
demo_scripts/pipeline_network_demo1.R
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inst/Rmd/eset_QC.Rmd
inst/Rmd/net_QC.Rmd
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inst/db/HUMAN/HUMAN_gene.RData
inst/db/HUMAN/HUMAN_transcript.RData
inst/db/HUMAN_SIG_ensembl_gene_id.txt
inst/db/HUMAN_SIG_external_gene_name.txt
inst/db/HUMAN_TF_ensembl_gene_id.txt
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inst/db/MOUSE/MOUSE_gene.RData
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inst/db/MOUSE_SIG_ensembl_gene_id.txt
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inst/db/MOUSE_TF_ensembl_gene_id.txt
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inst/demo1/network/SJAR/project_2019-02-14/output_sig_sjaracne_project_2019-02-14_out_.final/consensus_network_ncol_.txt
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man/get_IDtransfer2symbol2type.Rd
man/get_IDtransfer_betweenSpecies.Rd
man/get_clustComp.Rd
man/get_int_group.Rd
man/get_name_transfertab.Rd
man/get_net2target_list.Rd
man/get_obs_label.Rd
man/gs.preload.Rd
man/load.exp.GEO.Rd
man/load.exp.RNASeq.demo.Rd
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man/merge_TF_SIG.AC.Rd
man/merge_TF_SIG.network.Rd
man/merge_eset.Rd
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man/merge_target_list.Rd
man/out2excel.Rd
man/processDriverProfile.Rd
man/test.targetNet.overlap.Rd
man/update_SJAracne.network.Rd
man/update_eset.feature.Rd
man/update_eset.phenotype.Rd
man/z2col.Rd
push_docker_image.sh