get_cc: Import cross coalescence data
In k-hench/GenomicOriginsScripts: Provides the R scripts for the paper "Ancestral variation, hybridization and modularity fuel a marine radiation"

get_msmc imports cross coalescence data and extracts according run information.

1	get_cc(file, cc_groups, cc_path, mu = 3.7e-08, gen = 1)

`file`	cross coalescence file
`cc_groups`	cross coalescence group assignment reference table
`cc_path`	cross coalescence results path
`mu`	mutation rate mu
`gen`	generation time in years

The data is imported and run components are extracted from the a reference table, and added to the data.

Other Figure 2: get_msmc()

k-hench/GenomicOriginsScripts documentation built on July 24, 2021, 3:05 p.m.

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