get_neighbour_topos: Get pairwise highlighing topologies

In k-hench/GenomicOriginsScripts: Provides the R scripts for the paper "Ancestral variation, hybridization and modularity fuel a marine radiation"

Description

get_neighbour_topos finds all topologies where two species are sister species

Usage

get_neighbour_topos(topo_plots, left_neighbour, right_neighbour)

Arguments

topo_plots	tibble containing the topologies (in column 'phylo')
left_neighbour	string (species identifier for left neighbor)
right_neighbour	string (species identifier for right neighbor)

Details

First the distances of all species within all topologies are created. This is subset for the topologies where the distance between the two species equals 2 (2 edges).

See Also

Other Figure 5: ax_scl(), cross_spec(), custom_annoplot(), dist_tibble(), distances_tree(), get_clr(), get_dist(), get_gxp_long(), get_isolated_topos(), is_isolated(), min_dist(), no_title(), plot_curtain(), plot_fish_zoom(), plot_fst_poptree(), plot_leg(), plot_panel_anno(), plot_panel_delta_dxy(), plot_panel_dxy(), plot_panel_fst(), plot_panel_gxp(), plot_panel_twisst(), prep_data(), theme_panels()

k-hench/GenomicOriginsScripts documentation built on July 24, 2021, 3:05 p.m.