get_gxp_long: Import genotype x phenotype association in long format

In k-hench/GenomicOriginsScripts: Provides the R scripts for the paper "Ancestral variation, hybridization and modularity fuel a marine radiation"

Description

get_gxp_long imports genotype x phenotype association data in long format.

Usage

get_gxp_long(file, kb = 10)

Arguments

file	gpx results file
kb	gxp window size (matching file for string manipulation)

Details

The phenotype trait name is extracted from the file name. Then, the data is imported, the genomic poistion and the trait name is added as columns.

See Also

Other Figure 5: ax_scl(), cross_spec(), custom_annoplot(), dist_tibble(), distances_tree(), get_clr(), get_dist(), get_isolated_topos(), get_neighbour_topos(), is_isolated(), min_dist(), no_title(), plot_curtain(), plot_fish_zoom(), plot_fst_poptree(), plot_leg(), plot_panel_anno(), plot_panel_delta_dxy(), plot_panel_dxy(), plot_panel_fst(), plot_panel_gxp(), plot_panel_twisst(), prep_data(), theme_panels()

k-hench/GenomicOriginsScripts documentation built on July 24, 2021, 3:05 p.m.