hypo_annotation_baseplot: Plotting the annotation data frame

In k-hench/hypogen: Provides Hypoplectrus PopGen Data and Functions

Description

hypo_annotation_baseplot initializes the annotation plot.

Usage

hypo_annotation_baseplot(
  ...,
  searchLG,
  xrange,
  genes_of_interest = c(),
  genes_of_sec_interest = c(),
  anno_rown = 3,
  width = 0.1
)

Arguments

...	catch all parameter to allow excessive parameters through purrr::pmap
searchLG	string scalar (mandatory), should be on of "LG01" - "LG24"
xrange	integer vector (mandatory), data range to be loaded(start bp - end bp). Positions are defined with respect to the LG, NOT the overall genomic position.
genes_of_interest	string vector (optional), tags specific gene names for highlighting when plotting. (needs to exactly match the gene name of the original gff file)
genes_of_sec_interest	string vector (optional), tags specific gene names for secondary highlighting when plotting. (needs to exactly match the gene name of the original gff file)
anno_rown	integer scalar (optional), defines the number of gene rows to avoid overlapping.
width	float scalar (0-1, optional), defines the height of the exon boxes.

Details

This is wrapper that includes loading the annotations, and initializing the ggplot. Individual data tracks should be realized using faceting over the "window" column.

See Also

hypo_annotation_get, theme_hypo_anno_extra

k-hench/hypogen documentation built on April 14, 2021, 1:44 p.m.