pairwiseNicheOverlap: Make pairwise niche overlaps
In kaiyaprovost/subsppLabelR: Subspecies Labeled Occurences Generator

View source: R/CalculateNicheSubspeciesDifferences.R

pairwiseNicheOverlap

R Documentation

Make pairwise niche overlaps

Description

This function uses the background PCA grid for climate that was generated to calculate pairwise niche overlaps for the species.

Usage

pairwiseNicheOverlap(pca_grid_clim)

Arguments

pca_grid_clim

The grid for the climate PCA

Examples


loc_good_clean = cleanByEnvironment(Env, loc)
locs_thinned = spThinBySubspecies(loc_good_clean,thin.par=10,reps=1,lat.col="latitude",long.col="longitude",spec.col="assigned")
loc_thin_bgstuff = backgroundForPCA(localities=loc_good[,c("Longitude","Latitude")],r=200000,num=(100*nrow(localities)),e=Env)
perspecies_bgstuff = backgroundPerSpecies(loc_thin)
pcaOutput = createPcaToCompare(loc_thin_bgstuff,perspecies_bgstuffspecies)
pca_grid_clim = pcaOutput$grid_clim
overlap_df  = pairwiseNicheOverlap(pca_grid_clim)

kaiyaprovost/subsppLabelR documentation built on March 17, 2024, 5:09 p.m.