subspeciesOccQuery: Pull Subspecies Occurrences

In kaiyaprovost/subsppLabelR: Subspecies Labeled Occurences Generator

Pull Subspecies Occurrences

Description

This function uses spocc::occ to query GBIF and other repositories for one species and N number of subspecies, specified by the user. Returns a list of occurrence record objects. Note: currently only tested for N=2 and N=3 subspecies.

Usage

subspeciesOccQuery(
  spp,
  subsppList = NULL,
  pointLimit = 500,
  dbToQuery = c("gbif", "bison", "inat", "ecoengine", "vertnet"),
  ...
)

Arguments

spp	Genus and species to query, as string
subsppList	Strings of subspecies to query
pointLimit	Maximum point limit to return for each database – see spocc::occ
dbToQuery	List of databases to search through – see spocc::occ

Examples

listFromSubspeciesOcc = subspeciesOccQuery(spp="Cardinalis sinuatus",
   subsppList=c("sinuatus","peninsulae","fulvescens"),pointLimit=100,
   dbToQuery="gbif")

kaiyaprovost/subsppLabelR documentation built on Feb. 28, 2025, 8 p.m.