music_Theta: Subject and cell type specific relative abudance

In kalpita23/scRNA_package: Multi-subject single cell deconvolution

Description

This function is for calculating the subject and cell type specific relative abundance for selected cell types.

Usage

music_Theta(x, non.zero = FALSE, clusters, samples, select.ct = NULL)

Arguments

x	ExpressionSet, single cell dataset
non.zero	logical, defualt as F. If true, remove all gene with zero expression
clusters	character, the phenoData used as clusters
samples	character,the phenoData used as samples
select.ct	vector of cell types included, default as NULL. If NULL, include all cell types in x
markers	vector or list of gene names

Value

gene*subject by cell type matrix of relative abundance

kalpita23/scRNA_package documentation built on June 26, 2020, 12:15 a.m.