Code
unclass(summary(exact_res))
Output
$call
mem_exact(responses = vemu_wide1$responders, size = vemu_wide1$evaluable,
name = vemu_wide1$baskets, p0 = 0.25, cluster_analysis = TRUE)
$basket
The Null Response Rates (alternative is greater):
NSCLC CRC (vemu) CRC (vemu+cetu)
Null 0.250 0.250 0.25
Posterior Prob 0.951 0.002 0.00
Posterior Mean and Median Response Rates:
NSCLC CRC (vemu) CRC (vemu+cetu)
Mean 0.425 0.041 0.042
Median 0.422 0.032 0.033
Highest Posterior Density Interval with Coverage Probability 0.95:
NSCLC CRC (vemu) CRC (vemu+cetu)
lower 0.208 0.000 0.000
upper 0.628 0.105 0.109
Posterior Effective Sample Size:
NSCLC CRC (vemu) CRC (vemu+cetu)
19.93 55.647 50.867
$cluster
Cluster 1
"NSCLC"
Cluster 2
"CRC (vemu)" "CRC (vemu+cetu)"
The Null Response Rates (alternative is greater):
Cluster 1 Cluster 2
Posterior for null of 0.25 0.951 0.001
Posterior Mean and Median Response Rates:
Cluster 1 Cluster 2
Mean 0.425 0.041
Median 0.422 0.033
Highest Posterior Density Interval with Coverage Probability 0.95:
Cluster 1 Cluster 2
Lower Bound 0.214 0.000
Upper Bound 0.631 0.107
Posterior Effective Sample Size:
Cluster 1 Cluster 2
20.28 52.91
Code
summary(basket(responses = vemu_wide1$responders, size = vemu_wide1$evaluable,
name = vemu_wide1$baskets, cluster_analysis = TRUE, p0 = 0.25, method = "exact"))
Output
-- The MEM Model Call ----------------------------------------------------------
mem_exact(responses = responses, size = size, name = name, p0 = p0,
shape1 = shape1, shape2 = shape2, prior = prior, hpd_alpha = hpd_alpha,
alternative = alternative, seed = seed, cluster_analysis = cluster_analysis,
call = call, cluster_function = cluster_function)
-- The Basket Summary ----------------------------------------------------------
The Null Response Rates (alternative is greater):
NSCLC CRC (vemu) CRC (vemu+cetu)
Null 0.250 0.250 0.25
Posterior Prob 0.951 0.002 0.00
Posterior Mean and Median Response Rates:
NSCLC CRC (vemu) CRC (vemu+cetu)
Mean 0.424 0.041 0.042
Median 0.422 0.032 0.033
Highest Posterior Density Interval with Coverage Probability 0.95:
NSCLC CRC (vemu) CRC (vemu+cetu)
lower 0.215 0.000 0.000
upper 0.625 0.107 0.105
Posterior Effective Sample Size:
NSCLC CRC (vemu) CRC (vemu+cetu)
20.933 52.153 55.786
-- The Cluster Summary ---------------------------------------------------------
Cluster 1
"NSCLC"
Cluster 2
"CRC (vemu)" "CRC (vemu+cetu)"
The Null Response Rates (alternative is greater):
Cluster 1 Cluster 2
Posterior for null of 0.25 0.951 0.001
Posterior Mean and Median Response Rates:
Cluster 1 Cluster 2
Mean 0.424 0.041
Median 0.422 0.033
Highest Posterior Density Interval with Coverage Probability 0.95:
Cluster 1 Cluster 2
Lower Bound 0.219 0.000
Upper Bound 0.637 0.107
Posterior Effective Sample Size:
Cluster 1 Cluster 2
20.091 52.918
Code
summary(mem_exact(responses = c(4, 3, 0), size = c(10, 3, 0), name = letters[1:
3], cluster_analysis = TRUE, p0 = 0.25))
Output
-- The MEM Model Call ----------------------------------------------------------
mem_exact(responses = c(4, 3, 0), size = c(10, 3, 0), name = letters[1:3],
p0 = 0.25, cluster_analysis = TRUE)
-- The Basket Summary ----------------------------------------------------------
The Null Response Rates (alternative is greater):
a b c
Null 0.250 0.250 0.250
Posterior Prob 0.873 0.997 0.855
Posterior Mean and Median Response Rates:
a b c
Mean 0.420 0.848 0.590
Median 0.415 0.919 0.574
Highest Posterior Density Interval with Coverage Probability 0.95:
a b c
lower 0.146 0.473 0.067
upper 0.693 1.000 1.000
Posterior Effective Sample Size:
a b c
11.073 5.199 2.187
-- The Cluster Summary ---------------------------------------------------------
Cluster 1
"a"
Cluster 2
"b"
Cluster 3
"c"
The Null Response Rates (alternative is greater):
Cluster 1 Cluster 2 Cluster 3
Posterior for null of 0.25 0.873 0.997 0.855
Posterior Mean and Median Response Rates:
Cluster 1 Cluster 2 Cluster 3
Mean 0.420 0.848 0.590
Median 0.415 0.919 0.574
Highest Posterior Density Interval with Coverage Probability 0.95:
Cluster 1 Cluster 2 Cluster 3
Lower Bound 0.147 0.472 0.063
Upper Bound 0.699 1.000 1.000
Posterior Effective Sample Size:
Cluster 1 Cluster 2 Cluster 3
10.817 5.171 2.12
Code
summary(mem_exact(responses = c(4, 3), size = c(10, 3), name = letters[1:2],
cluster_analysis = TRUE, p0 = 0.25))
Output
-- The MEM Model Call ----------------------------------------------------------
mem_exact(responses = c(4, 3), size = c(10, 3), name = letters[1:2],
p0 = 0.25, cluster_analysis = TRUE)
-- The Basket Summary ----------------------------------------------------------
The Null Response Rates (alternative is greater):
a b
Null 0.250 0.250
Posterior Prob 0.873 0.997
Posterior Mean and Median Response Rates:
a b
Mean 0.419 0.847
Median 0.414 0.918
Highest Posterior Density Interval with Coverage Probability 0.95:
a b
lower 0.148 0.474
upper 0.699 1.000
Posterior Effective Sample Size:
a b
10.816 5.251
-- The Cluster Summary ---------------------------------------------------------
Cluster 1
"a"
Cluster 2
"b"
The Null Response Rates (alternative is greater):
Cluster 1 Cluster 2
Posterior for null of 0.25 0.872 0.997
Posterior Mean and Median Response Rates:
Cluster 1 Cluster 2
Mean 0.419 0.847
Median 0.414 0.918
Highest Posterior Density Interval with Coverage Probability 0.95:
Cluster 1 Cluster 2
Lower Bound 0.148 0.471
Upper Bound 0.699 1.000
Posterior Effective Sample Size:
Cluster 1 Cluster 2
10.841 5.188
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