Updated URL for GeneNetwork API
Remove an example from the vignette that no longer works:
"get the information for a specific group," list_groups("rat", "HSNIH-Palmer")
run_gemma()
and run_rqtl()
are working again.
Trapped additional errors by looking for Error:
in title of
output. (in new internal function error_in_title()
)
get_geno()
is working again
info_pheno()
can no longer get a list of traits within a group
list_groups()
no longer takes an individual group name
query_gn()
to change NULL output to NA.run_rqtl()
.gn2.genenetwork.org/api/pre_v1
Fixed run_gemma()
, run_rqtl()
, and run_correlations()
as
genenetwork API changed (now giving JSON output)
list_groups()
can be used to get information for a specific group.
list_datasets()
can be used to get information for a specific dataset.
Remove info_dataset()
and info_datasets()
; for both can be just
use list_datasets()
.
Include limit
argument for info_pheno()
.
list_groups()
was messed up when a species was provided.
Fix get_geno()
so it returns NULL
if the result has no data.
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