Identifying Clusters of Related Individuals

aedes | Data on Aedes aegypti |

calc.dist | Calculate simple distance matrix |

cluster.stat | Calculate measure of quality of inferred clusters |

comp.fams | Compare two sets of clusters |

cutoff | Calculate cutoff for clustering with RAPD markers |

cutoff.llr | Calculate cutoff for clustering with RAPD markers |

dist.image | Plot distance matrix |

fingers | Infer clusters of related individuals |

fingers-internal | Internal fingers functions |

freq | Estimate RAPD allele frequencies |

llrdist | Calculate distance matrix based on log likelihood ratio |

pull.markers | Extract markers with allele frequencies in specified range |

shiff1 | Schistosome data |

shiff2 | Schistosome data |

shiff3 | Schistosome data |

simrapd | Simulate RAPD data |

simulfams | Simulate RAPD data |

true.fams | Identify the true clusters |

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