true.fams: Identify the true clusters

In kbroman/fingers: Identifying Clusters of Related Individuals

Identify the true clusters

Description

Use the row names of a RAPD data set to identify the true sets of families.

Usage

true.fams(dat)

Arguments

dat	A matrix of size (n.ind x n.mar) containing RAPD phenotypes, with 1 indicating the presence of a band and 0 indicating absence. The row names (identifying individuals) are assumed to be of the form "family-individual"

Value

A list of clusters; each component in the list is one inferred family, containing the indices of individuals placed in that family.

Author(s)

Karl W Broman [e-mail]

References

BL Apostol, WC Black IV, BR Miller, P Reiter, BJ Beaty (1993) Estimation of the number of full sibling families at an oviposition site using RAPD-PCR markers: applications to the mosquito Aedes aegypti. Theor Appl Genet 86:991-1000.

See Also

aedes, simrapd, fingers, cluster.stat

Examples

data(aedes)
tf <- true.fams(aedes)

kbroman/fingers documentation built on May 17, 2023, 11:50 p.m.