cutoff | R Documentation |
Calculate the cutoff for hierarchical cluster analysis to infer groups of related individuals with RAPD data.
cutoff(f,method=c("qu","meansib","qs","lr"),value=0.2)
f |
A vector of band allele frequencies for a set of RAPD markers. |
method |
The method to use to form the cutoff: a quantile of the
distribution of distances among unrelated ( |
value |
For |
The cutoff (a single value).
Karl W Broman broman@wisc.edu
BL Apostol, WC Black IV, BR Miller, P Reiter, BJ Beaty (1993) Estimation of the number of full sibling families at an oviposition site using RAPD-PCR markers: applications to the mosquito Aedes aegypti. Theor Appl Genet 86:991-1000.
cutoff.llr
,
freq
,
pull.markers
,
fingers
data(aedes)
f <- freq(aedes)
co1 <- cutoff(f,method="meansib")
co2 <- cutoff(f,method="qu",value=0.2)
co3 <- cutoff(f,method="qs",value=0.9)
co4 <- cutoff(f,method="lr",value=4.0)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.