Man pages for kegrinde/STEAM
Significance Threshold Estimation for Admixture Mapping
| combine_corr_chr | Calculate Correlation in Local Ancestry (K = 3) |
| example_ab | Example a,b scalars |
| example_corr | Example local ancestry correlation |
| example_corr_K3 | Example local ancestry correlation: K = 3 |
| example_L | Example L matrix |
| example_map | Example map file |
| example_props | Example admixture proportions |
| example_props_K3 | Example admixture proportions: K = 3 |
| exp_corr | Expected Local Ancestry Correlation |
| get_ab | Helper Function: Calculate Scalars |
| get_corr_chr | Calculate Correlation in Local Ancestry (K = 3) |
| get_deltas | Pairwise distances between markers |
| get_g | Estimate Number of Generations since Admixture |
| get_L | Expected correlation: one locus, square root |
| get_sigma | Expected correlation: one locus, all ancestries |
| get_sigma_ij | Expected correlation: one locus, one pair of ancestries |
| get_thresh_analytic | Significance Threshold Estimation for Admixture Mapping using... |
| get_thresh_simstat | Significance Threshold Estimation for Admixture Mapping using... |
| nu | Helper Function for Ornstein Uhlenbeck Approximation |
| OU_approx | Ornstein Uhlenbeck Approximation to Family-Wise Error Rate |
| run_unc_nls | Run Unconstrained NLS Regression |
| simstat_once | Simulate Admixture Mapping Test Statistics |
| STEAM | STEAM: Significance Threshold Estimation for Admixture... |
| upper_alpha | Helper Function: Calculate Quantile |
