API for keita-iida/ASURATBI
A pipeline especially built for computing several single-cell datasets
| Global functions | |
|---|---|
| .onAttach | Source code |
| ASURATBI | Man page |
| addCoordinates | Source code |
| add_metadata | Man page Source code |
| bubble_sort | Man page Source code |
| cluster_genesets | Man page Source code |
| compute_sepI_all | Man page Source code |
| compute_sepI_clusters | Man page Source code |
| convertIfNULL | Source code |
| convertIfTRUE | Source code |
| convertSize | Source code |
| createSCE | Source code |
| createSeurat | Source code |
| createVisiumSCE | Source code |
| create_signs | Man page Source code |
| getCoordinates | Source code |
| getExprs | Source code |
| getImage | Source code |
| getMetadata | Source code |
| human_COMSig_eg | Man page |
| human_GO_eg | Man page |
| human_KEGG_eg | Man page |
| makeCoordinates | Source code |
| makeGGDF | Source code |
| makeSignMatrix | Man page Source code |
| markClusterCol | Source code |
| parseImage | Source code |
| parseVisumImage | Source code |
| pbmc_eg | Man page |
| pbmcs_eg | Man page |
| plotImage | Source code |
| plot_dataframe3D | Man page Source code |
| plot_elasticTree3D | Man page Source code |
| plot_multiheatmaps | Man page Source code |
| plot_pseudotime3D | Man page Source code |
| plot_pseudotimecourse_wTree | Man page Source code |
| plot_pseudotimecourse_woTree | Man page Source code |
| pointRange | Source code |
| read10XBarcodes | Source code |
| removeSpots | Source code |
| remove_samples | Man page Source code |
| remove_signs | Man page Source code |
| remove_signs_manually | Man page Source code |
| remove_signs_redundant | Man page Source code |
| remove_variables | Man page Source code |
| remove_variables_second | Man page Source code |
| runShinySpaniel | Source code |
| selectSpots | Source code |
| select_signs_manually | Man page Source code |
| server | Source code |
| setVars | Source code |
| swap_pass | Man page Source code |
| testObject | Source code |
| ungroupVars | Source code |
| updateMetadata | Source code |
