plot_pseudotime3D: Plot pseudotime computed by MERLoT.

In keita-iida/ASURATBI: A pipeline especially built for computing several single-cell datasets

Plot pseudotime computed by MERLoT.

Description

This function shows pseudotimes in low-dimensional spaces.

Usage

plot_pseudotime3D(
  ElasticTree,
  Pseudotimes,
  labels,
  colors,
  theta = 30,
  phi = 30,
  title = "",
  xlabel = "",
  ylabel = "",
  zlabel = ""
)

Arguments

ElasticTree	An elastic tree object computed by MERLoT.
Pseudotimes	A pseudotime (high-dim) object computed by MERLoT.
labels	NULL or a vector of labels of all the samples, corresponding to colors.
colors	NULL or a vector of colors of all the samples, corresponding to labels.
theta	Angle of the plot.
phi	Angle of the plot.
title	Title.
xlabel	x-axis label.
ylabel	y-axis label.
zlabel	z-axis label.

Value

A scatter3D object in plot3D package.

keita-iida/ASURATBI documentation built on Feb. 16, 2023, 9:37 a.m.