plot_pseudotimecourse_wTree: Plot pseudotime courses of sign scores with elastic tree.

In keita-iida/ASURATBI: A pipeline especially built for computing several single-cell datasets

Plot pseudotime courses of sign scores with elastic tree.

Description

This function shows sign scores and elastic trees along pseudotimes.

Usage

plot_pseudotimecourse_wTree(
  sce,
  signID,
  ElasticTree,
  SignsSpaceEmbedding,
  Pseudotimes,
  labels,
  range_y
)

Arguments

sce	A SingleCellExperiment object.
signID	A signID.
ElasticTree	An elastic tree object computed by MERLoT.
SignsSpaceEmbedding	A sign space embedding object computed by MERLoT.
Pseudotimes	A pseudotime (high-dim) object computed by MERLoT.
labels	NULL or a vector of labels of all the samples.
range_y	"cells" or "tree", which determines the range of y-axis.

Value

A ggplot object.

keita-iida/ASURATBI documentation built on Feb. 16, 2023, 9:37 a.m.