README.md

In keithschulze/supr: Analysis of single molecule localisation data from super-resolution microscopy

Super-resolution microscopy analysis in R

WARNING: This package is no longer under development. It is now archived.

Package of tools for doing various types of super-resolution microscopy data analysis. At the moment the package has very limited functionality, but the hope is to expand its functionality substantially in the future. Currently the tools are primarily focused around providing Ripley's K type cluster analysis1 and co-cluster2 analysis of single molecule super-resolution microscopy data. The code heavily utilises spatstat and, at this early stage, any potential users are strongly encouraged to get familiar with spatstat before attempting to use this package.

1Owen, D. M., Rentero, C., Rossy, J., Magenau, A., Williamson, D., Rodriguez, M., & Gaus, K. (2010). PALM imaging and cluster analysis of protein heterogeneity at the cell surface. Journal of Biophotonics, 3(7), 446–454. http://doi.org/10.1002/jbio.200900089

2Rossy, J., Cohen, E., Gaus, K., & Owen, D. M. (2014). Method for co-cluster analysis in multichannel single-molecule localisation data. Histochemistry and Cell Biology, 141(6), 605–612. http://doi.org/10.1007/s00418-014-1208-z

Installation

You will need to install the supr package from github using devtools:

# install.packages("devtools")
devtools::install_github("keithschulze/supr")

keithschulze/supr documentation built on Nov. 26, 2022, 7:09 a.m.