Man pages for keithschulze/supr
Analysis of single molecule localisation data from super-resolution microscopy
| all_types | Summary statistics for all types in a Multitype Point Pattern |
| check_parallel | Simple function to establish whether things can be run in... |
| clear_border | Clear connected regions touching edges |
| co_cluster_l_cross | Co-cluster analysis using self- and cross-type local... |
| co_cluster_quadrant | Quadrant analysis of self- vs. cross local L-function values |
| exchange_xy_for_marks | Exchange 'x' and 'y' coords for others stored as marks |
| fortify.im | Fortify method for 'im' objects |
| fortify.owin | Fortify method for unpacking 'owin' objects. |
| fortify.ppp | Fortify method for 'ppp' objects |
| fortify.psp | Fortify method for 'psp' objects |
| interpolate_surface | Interpolate a surface over a spatial point pattern |
| local_k | Neighbourhood density function |
| local_k_cross | Multitype (cross-type) neighbourhood density function |
| local_k_cross_inhom | Inhomogeneous multitype (cross-type) neighbourhood density... |
| local_k_inhom | Inhomogeneous Neighbourhood density function |
| multi_local_l | Local L-function analysis |
| multi_local_lcross | Cross-type Local L-function analysis |
| peak_local_max | Feature detection functions. Peak local max |
| peak_r | Calculate r value at L(r) - r peaks |
| read.moleculelist_nstorm | Nikon N-STORM molecule list reader |
| read.moleculelist_rapidstorm | Rapidstorm molecule list reader |
| read.moleculelists | Function to read multiple datasets using a specific reader |
| read.moleculelist_thunderstorm | Thunderstorm molecule list reader |
| read.polygon_roi | Read a polygon owin from a tab-delimited txt file |
| read.rois | Function to read multiple windows using a specified reader... |
| region_props | Measure properties of different regions in a labelled image. |
| remove_small_objects | Remove connected regions/objects smaller than a specified... |
| start_matlab | Utility function to start matlab server using R.matlab. |
| watershed | Watershed segmentation of spatstat im object. |
| with_matlab | Run matlab code using R.matlab |
