annotatingGenes: A function to associate EG and name symbols to...
In kendomaniac/embl120215: A package for secondary analysis of fusion products

A function to associate EG and name symbols to rsem-generated-gene-tables, using UCSC as annotation

1	annotatingGenes(filename, org=c("hg19","mm9"), truncating.expected.counts=FALSE)

`filename`	Name of the file generated with rsem with the suffix .genes.results
`org`	A tag indicating the organism and its genomic version
`truncating.expected.counts`	the expected counts calculated by rsem are nont integer. If this parameter is set to TRUE the expected counts are truncated removing the decimals and converted in integers

Raffaele A Calogero

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#	dir <- dir()
#	dir <- dir[grep(".genes.results", dir)]
#	tmp <- annotatingGenes(filename=dir[1], org="mm9")

kendomaniac/embl120215 documentation built on Aug. 23, 2020, 7:39 a.m.

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