plotChrs: A function plot a genes to chromosome association

In kendomaniac/embl120215: A package for secondary analysis of fusion products

Description

A function to plot genes to chromosome association

Usage

plotChrs(de.df, org, genome, plot=c("bars","chart"))

Arguments

de.df	A dataframe of differentially expressed genes having columns log2FC, SYMBOLS, ENTREZID, GENE DESCRIPTION
org	Organism database, e.g. Homo.sapiens
genome	Genome version, e.g. mm10
plot	type of output plot. bars provides a plot of the number of genes in any chromosomes. Chart provides a plot of the position of the genes on the chromosomes

Author(s)

Raffaele A Calogero

Examples

#de.lst <- plotChrs(de.df=de.selected, org="Mus.musculus", genome="mm10", plot="bar")
#de.lst <- plotChrs(de.df=de.selected, org="Mus.musculus", genome="mm10", plot="chart")

kendomaniac/embl120215 documentation built on Aug. 23, 2020, 7:39 a.m.