NEWS.md

In kenkellner/ubms: Bayesian Models for Data from Unmarked Animals using 'Stan'

ubms 1.2.7

• Package links now go to biodiverse Github org
• Use reformulas instead of lme4
• Return eta from ranef when submodel has spatial component
• Support terra format rasters in predict
• Minor bugfixes

ubms 1.2.6

• Fix deprecated Stan code

ubms 1.2.5

• Fix issue with version number not being a string
• Adding missing roxygen tag

ubms 1.2.4

• Adjust Makevars to fix problems with clang 16

ubms 1.2.3

• Fix bug in Stan code revealed by new StanHeaders
• Drop C++ specification per CRAN instructions
• Remove deprecated ggplot2 functions
• Small updates to overview vignette

ubms 1.2.2

• Fix broken URLs in vignettes
• New kfold function
• Add ability to not save log likelihoods in posterior
• Add new Laplace prior (thanks Justin Cally)
• Better handling of factors with levels that don't appear in data
• Fix CRAN clang warnings
• Misc. bugfixes

ubms 1.1.0

• Support for restricted spatial regression (RSR)
• Add vignette for RSR
• Update default priors and allow setting custom priors
• Support for offsets
• New utility functions and bugfixes

ubms 1.0.2

• Make default priors less informative
• Fix issues in sim_z C++ code that triggered clang-UBSAN errors
• Fix various minor issues with checks/tests on R-oldrel

ubms 1.0.1

• Added vignette comparing ubms and JAGS output
• Added configuration for pkgdown site
• Small adjustments to wording in DESCRIPTION and docs for CRAN submission

ubms 0.1.9

• Add time-to-detection occupancy model (stan_occuTTD)
• Wrote examples for all fitting functions
• Many new tests added
• Wrote a vignette demonstrating random effects

ubms 0.1.8

• Added distance-sampling model (stan_distsamp)
• Added multinomial-Poisson mixture model (stan_multinomPois)
• Wrote overview vignette

ubms 0.1.4

• Added dynamic occupancy model (stan_colext)
• Consolidated single-season models into one Stan file to speed up compilation
• Using rasters as predict input is now supported

kenkellner/ubms documentation built on March 1, 2025, 7:02 a.m.