crossRefractoryRatio-methods: Get the cross refractory ratio of each cluster from its...

In kevin-allen/relectro: Analysis of electrophysiological data

Description

This tells you whether a cluster has a common refractory period with other cluster. If this is the case, perhaps the two clusters are from the same neuron.

Usage

crossRefractoryRatio(st, refractoryMs = 1.5, binSizeMs = 0.5,
  windowSizeMs = 25, minControlWindowMs = 5, maxControlWindowMs = 25)

## S4 method for signature 'SpikeTrain'
crossRefractoryRatio(st, refractoryMs = 1.5,
  binSizeMs = 0.5, windowSizeMs = 25, minControlWindowMs = 5,
  maxControlWindowMs = 25)

Arguments

st	SpikeTrain object
refractoryMs	Length of the refractory period in ms
binSizeMs	Size of the bins in the spike-time autocorrelation
windowSizeMs	Size of the window used to construct the spike-time autocorrelation
minControlWindowMs	Minimum time of the control window
maxControlWindowMs	Maximal time of the control window

Details

This is the ratio between the mean number of spikes falling in the bins of the refractory period compared to the max number of spikes falling in one bin of the control period outside the refractory period. Note that the spike-time crosscorrelations in the SpikeTrain object will be modified.

Value

a SpikeTrain object with the refractoryRation set.

kevin-allen/relectro documentation built on May 20, 2019, 9:06 a.m.